Surveillance video shows the hooded suspect holding a gun while going through the cash register at the Lil' Brown Jug liquor store last Friday.
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The employee who was forced to open the register was not injured.
The video helped police identify the man involved. On Thursday, Clovis police arrested 23-year-old Jeffery Jordan.
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Jordan was already on probation in Madera County for felony burglary. He has been booked in the Fresno County jail on multiple charges.