34-year-old Garth Moore was first reported missing early January.
Following an investigation, detectives served a search warrant at a home on Highway 180 and Leonard Avenue in Sanger last week.
46-year-old Michael Bulaich of Sanger was taken into custody.
He has been booked into the Fresno County Jail, facing a murder charge.
Bulaich has pleaded not guilty and is expected back in court in March.