Signage of the closure has since been posted outside the restaurant.
The lease was not up, and news of the shutdown came as a surprise at the shopping center.
Rubio's had been in its current location for 15 years and had once occupied a portion of what is now Yard House.
According to Rubio's website, the only Central Valley locations listed are now Clovis and Visalia.
Rubio's has yet to comment on the closure.