Officers responded to multiple Shotspotter notifications at Shields Avenue and Channing Way around 11 am.
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Investigators say an argument broke out between two men in the parking lot. The men then opened fire on each other.
A 21-year-old man was shot twice in the stomach and chest. Officers say he ran to a nearby home and was taken to Community Regional Medical Center with non-life-threatening injuries.
Authorities say he is not cooperating with their investigation.
Officers are now searching for the other man involved, who they believe is in his 20s and has a ponytail. He drove off in a grey sedan.
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It's unclear if the shooting was gang-related.
Detectives are collecting evidence within the parking lot, reviewing surveillance footage and looking for witnesses.
Anyone with information is asked to call the Fresno Police Department.